There’s no clear answer, and you may have to argue your position for this deduction if your return is questioned. On the one hand, the Tax Court allowed a deduction for the extra cost of organic food compared with the cost of regular (chemically treated) food where a doctor prescribed the diet to treat a specific condition such as allergies (see, e.g., Theron G. Randolph, 67 TC 481 (1976); Leona Von Kalb, TC Memo 1978-366). And a district court allowed a deduction for the cost of constructing a concrete home for an allergy sufferer (Lawrence S. Zipkin, D Minn, 2002-2 USTC ¶50,863).
However, the Tax Court denied a deduction for the cost of ripping up carpeting and installing a wood floor by a person with allergies (Ilija Mitic, TC Memo 2000-144).
On Form 1040X, you may file an amended return within a three-year period to claim a refund or correct a mistake made on an original or previously amended return.